neobio.jar - NeoBio - Bioinformatics Algorithms in Java

Q

NeoBio is a library of bioinformatics algorithms implemented in Java. The current version consists mainly of (pairwise) sequence alignment algorithms such as the classical dynamic programming methods of Needleman and Wunsch (global alignment) and Smith and Waterman (local alignment).

JAR File Size and Download Location:

File name: neobio.jar
File size: 104748 bytes
Date modified: 29-Sep-2003
Download: NeoBio - Bioinformatics Algorithms in Java

Manifest of the JAR:

Main-Class: neobio/gui/NeoBio

✍: .fyicenter.com

A

List of Classes in the JAR:

neobio/gui/AboutDialog
neobio/gui/NeoBio
neobio/gui/PairwiseAlignmentFrame
neobio/textui/NeoBio
neobio/textui/RandomFactorSequenceGenerator
neobio/textui/RandomSequenceGenerator
neobio/alignment/PairwiseAlignmentAlgorithm
neobio/alignment/ScoringScheme
neobio/alignment/IncompatibleScoringSchemeException
neobio/alignment/PairwiseAlignment
neobio/alignment/InvalidSequenceException
neobio/alignment/AlignmentBlock
neobio/alignment/Factor
neobio/alignment/BasicScoringScheme
neobio/alignment/CharSequence
neobio/alignment/CrochemoreLandauZivUkelson
neobio/alignment/FactorSequence
neobio/alignment/Smawk
neobio/alignment/Matrix
neobio/alignment/OutMatrix
neobio/alignment/CrochemoreLandauZivUkelsonGlobalAlignment
neobio/alignment/CrochemoreLandauZivUkelsonLocalAlignment
neobio/alignment/LocalAlignmentBlock
neobio/alignment/InvalidScoringMatrixException
neobio/alignment/NeedlemanWunsch
neobio/alignment/ScoringMatrix
neobio/alignment/SmithWaterman
neobio/alignment/Trie

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