BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.

biojava3-structure-gui.jar is the Structure GUI module of BioJava 3.

JAR File Size and Download Location:

File name: biojava3-structure-gui.jar, biojava3-structure-gui-3.0.2.jar
File name: biojava3-structure-gui-3.0.2.jar
File size: 277329 bytes
Date modified: 02-Sep-2011
Download: BioJava 3.0 - Structure GUI

Manifest of the JAR:

Archiver-Version: Plexus Archiver
Built-By: andreas
Build-Jdk: 1.7.0

List of Classes in the JAR:

org/biojava/bio/structure/gui/JMatrixPanel
org/biojava/bio/structure/gui/events/JmolAlignedPositionListener
org/biojava/bio/structure/gui/events/AlignmentPositionListener
org/biojava/bio/structure/gui/BiojavaJmol
org/biojava/bio/structure/gui/ScaleableMatrixPanel
org/biojava/bio/structure/gui/SequenceDisplay
org/biojava/bio/structure/gui/RasmolCommandListener
org/biojava/bio/structure/gui/util/JTableMouseButtonListener
org/biojava/bio/structure/gui/util/JTableDataButtonModel
org/biojava/bio/structure/gui/util/ScopInstallationInstance
org/biojava/bio/structure/gui/util/PDBDirPanel
org/biojava/bio/structure/gui/util/MatrixMouseListener
org/biojava/bio/structure/gui/util/AlignedPosition
org/biojava/bio/structure/gui/util/ScopSelectPanel
org/biojava/bio/structure/gui/util/JButtonTableCellRenderer
org/biojava/bio/structure/gui/util/ChooseAction
org/biojava/bio/structure/gui/util/MenuCreator
org/biojava/bio/structure/gui/util/AlternativeAlignmentFrame
org/biojava/bio/structure/gui/util/AlignmentCalc
org/biojava/bio/structure/gui/util/CoordManager
org/biojava/bio/structure/gui/util/ChooseDirAction
org/biojava/bio/structure/gui/util/color/LinearColorInterpolator
org/biojava/bio/structure/gui/util/color/ContinuousColorMapper
org/biojava/bio/structure/gui/util/color/HSVColorSpace
org/biojava/bio/structure/gui/util/color/GradientMapper
org/biojava/bio/structure/gui/util/color/ColorUtils
org/biojava/bio/structure/gui/util/color/GradientPanel
org/biojava/bio/structure/gui/util/color/SqrtColorMapper
org/biojava/bio/structure/gui/util/color/ContinuousColorMapperTransform
org/biojava/bio/structure/gui/util/color/DefaultMatrixMapper
org/biojava/bio/structure/gui/util/color/LogColorMapper
org/biojava/bio/structure/gui/util/color/ColorInterpolator
org/biojava/bio/structure/gui/util/MyButtonMouseListener
org/biojava/bio/structure/gui/util/SequenceMouseListener
org/biojava/bio/structure/gui/util/PDBUploadPanel
org/biojava/bio/structure/gui/util/SequenceScalePanel
org/biojava/bio/structure/gui/util/StructurePairSelector
org/biojava/bio/structure/gui/util/PDBServerPanel
org/biojava/bio/structure/align/webstart/AligUIManager
org/biojava/bio/structure/align/webstart/ConfigXMLHandler
org/biojava/bio/structure/align/webstart/JNLPProxy
org/biojava/bio/structure/align/webstart/WebStartMain
org/biojava/bio/structure/align/webstart/BrowserOpener
org/biojava/bio/structure/align/webstart/PersistentConfig
org/biojava/bio/structure/align/webstart/WebStartDBSearch
org/biojava/bio/structure/align/gui/AlignmentGui
org/biojava/bio/structure/align/gui/MyAction
org/biojava/bio/structure/align/gui/MyTableRowSorter
org/biojava/bio/structure/align/gui/AlignmentCalcDB
org/biojava/bio/structure/align/gui/JPrintPanel
org/biojava/bio/structure/align/gui/AlignmentCalculationRunnable
org/biojava/bio/structure/align/gui/StructureAlignmentDisplay
org/biojava/bio/structure/align/gui/AboutDialog
org/biojava/bio/structure/align/gui/MyAlignmentLoadListener
org/biojava/bio/structure/align/gui/ProgressThreadDrawer
org/biojava/bio/structure/align/gui/HelpDialog
org/biojava/bio/structure/align/gui/DotPlotPanel
org/biojava/bio/structure/align/gui/MenuCreator
org/biojava/bio/structure/align/gui/DBResultTable
org/biojava/bio/structure/align/gui/MyOpenPdbFileListener
org/biojava/bio/structure/align/gui/AlignmentCalc
org/biojava/bio/structure/align/gui/ChooseDirAction
org/biojava/bio/structure/align/gui/jmol/StructureAlignmentJmol
org/biojava/bio/structure/align/gui/jmol/AtomInfo
org/biojava/bio/structure/align/gui/jmol/JmolPanel
org/biojava/bio/structure/align/gui/jmol/RasmolCommandListener
org/biojava/bio/structure/align/gui/jmol/MyJmolStatusListener
org/biojava/bio/structure/align/gui/jmol/AtomInfoParser
org/biojava/bio/structure/align/gui/jmol/JmolTools
org/biojava/bio/structure/align/gui/DBSearchGUI
org/biojava/bio/structure/align/gui/MyDistMaxListener
org/biojava/bio/structure/align/gui/AlignmentTextPanel
org/biojava/bio/structure/align/gui/GUIFarmJobRunnable
org/biojava/bio/structure/align/gui/MySaveFileListener
org/biojava/bio/structure/align/gui/ShowPDBIDListener
org/biojava/bio/structure/align/gui/ParameterGUI
org/biojava/bio/structure/align/gui/SelectPDBPanel
org/biojava/bio/structure/align/gui/aligpanel/AligPanel
org/biojava/bio/structure/align/gui/aligpanel/AligPanelMouseMotionListener
org/biojava/bio/structure/align/gui/aligpanel/StatusDisplay
org/biojava/bio/structure/align/gui/aligpanel/AFPChainCoordManager
org/biojava/bio/structure/align/gui/SystemInfo
org/biojava/bio/structure/align/gui/GUIAlignmentProgressListener
org/biojava/bio/structure/align/gui/MyExportListener
org/biojava/bio/structure/align/gui/DisplayAFP
org/biojava/bio/structure/align/gui/ConfigPDBInstallPanel
org/biojava/bio/structure/align/gui/MyComparator
org/biojava3/structure/gui/RenderStyle
org/biojava3/structure/gui/JmolViewerImpl
org/biojava3/structure/gui/Selection
org/biojava3/structure/gui/StructureViewer
org/biojava3/structure/gui/SelectionImpl
demo/DemoFATCAT
demo/AlignmentGuiDemo
demo/DemoSW3DAligner
demo/CookBook
demo/WebStartClientDemo
demo/DemoCE
demo/ShowStructureInJmol