Jmol-12.2.7.jar - Java viewer for chemical structures

Q

Jmol is an open-source Java viewer for chemical structures in 3D Jmol icon with features for chemicals, crystals, materials and biomolecules

JAR File Size and Download Location:

File name: Jmol.jar, Jmol-12.2.7.jar
File size: 6024879 bytes
Date modified: 26-Nov-2011
Download: Jmol - Java viewer for chemical structures

✍: FYIcenter

A

List of Classes in the JAR:

com/json/CDL
com/json/Cookie
com/json/CookieList
com/json/HTTP
com/json/HTTPTokener
com/json/JSONArray
com/json/JSONException
com/json/JSONML
com/json/JSONObject
com/json/JSONString
com/json/JSONStringer
com/json/JSONTokener
com/json/JSONWriter
com/json/XML
com/json/XMLTokener
com/obrador/DCT
com/obrador/Huffman
com/obrador/Jpeg
com/obrador/JpegEncoder
com/obrador/JpegInfo
com/sparshui/client/ClientServerConnection
com/sparshui/client/ClientToServerProtocol
com/sparshui/client/SparshClient
com/sparshui/common/ClientProtocol
com/sparshui/common/ConnectionType
com/sparshui/common/Event
com/sparshui/common/Location
com/sparshui/common/NetworkConfiguration
com/sparshui/common/TouchState
com/sparshui/common/messages/events/DragEvent
com/sparshui/common/messages/events/EventType
com/sparshui/common/messages/events/FlickEvent
com/sparshui/common/messages/events/RelativeDragEvent
com/sparshui/common/messages/events/RotateEvent
com/sparshui/common/messages/events/SpinEvent
com/sparshui/common/messages/events/TouchEvent
com/sparshui/common/messages/events/ZoomEvent
com/sparshui/common/utils/Converter
com/sparshui/gestures/Gesture
com/sparshui/gestures/GestureType
com/sparshui/inputdevice/JmolTouchSimulator
com/sparshui/server/ClientConnection
com/sparshui/server/GestureFactory
com/sparshui/server/GestureServer
com/sparshui/server/Group
com/sparshui/server/InputDeviceConnection
com/sparshui/server/ServerToClientProtocol
com/sparshui/server/TouchPoint
org/jmol/adapter/readers/cifpdb/CifReader
org/jmol/adapter/readers/cifpdb/PdbReader
org/jmol/adapter/readers/molxyz/Mol3DReader
org/jmol/adapter/readers/molxyz/MolReader
org/jmol/adapter/readers/molxyz/XyzReader
org/jmol/adapter/readers/more/BinaryDcdReader
org/jmol/adapter/readers/more/BinaryReader
org/jmol/adapter/readers/more/ForceFieldReader
org/jmol/adapter/readers/more/GromacsReader
org/jmol/adapter/readers/more/MdCrdReader
org/jmol/adapter/readers/more/MdTopReader
org/jmol/adapter/readers/more/Mol2Reader
org/jmol/adapter/readers/more/P2nReader
org/jmol/adapter/readers/more/PqrReader
org/jmol/adapter/readers/quantum/AdfReader
org/jmol/adapter/readers/quantum/BasisFunctionReader
org/jmol/adapter/readers/quantum/CsfReader
org/jmol/adapter/readers/quantum/DgridReader
org/jmol/adapter/readers/quantum/GamessReader
org/jmol/adapter/readers/quantum/GamessUKReader
org/jmol/adapter/readers/quantum/GamessUSReader
org/jmol/adapter/readers/quantum/GaussianReader
org/jmol/adapter/readers/quantum/GaussianWfnReader
org/jmol/adapter/readers/quantum/GenNBOReader
org/jmol/adapter/readers/quantum/JaguarReader
org/jmol/adapter/readers/quantum/MOReader
org/jmol/adapter/readers/quantum/MoldenReader
org/jmol/adapter/readers/quantum/MopacGraphfReader
org/jmol/adapter/readers/quantum/MopacSlaterReader
org/jmol/adapter/readers/quantum/NWChemReader
org/jmol/adapter/readers/quantum/OdysseyReader
org/jmol/adapter/readers/quantum/PsiReader
org/jmol/adapter/readers/quantum/QchemReader
org/jmol/adapter/readers/quantum/SlaterReader
org/jmol/adapter/readers/quantum/SpartanArchive
org/jmol/adapter/readers/quantum/SpartanInputReader
org/jmol/adapter/readers/quantum/SpartanReader
org/jmol/adapter/readers/quantum/SpartanSmolReader
org/jmol/adapter/readers/quantum/WebMOReader
org/jmol/adapter/readers/simple/AlchemyReader
org/jmol/adapter/readers/simple/AmpacReader
org/jmol/adapter/readers/simple/CubeReader
org/jmol/adapter/readers/simple/FoldingXyzReader
org/jmol/adapter/readers/simple/GhemicalMMReader
org/jmol/adapter/readers/simple/HyperChemReader
org/jmol/adapter/readers/simple/JmeReader
org/jmol/adapter/readers/simple/MopacReader
org/jmol/adapter/readers/xml/XmlArgusReader
org/jmol/adapter/readers/xml/XmlChem3dReader
org/jmol/adapter/readers/xml/XmlCmlReader
org/jmol/adapter/readers/xml/XmlMolproReader
org/jmol/adapter/readers/xml/XmlOdysseyReader
org/jmol/adapter/readers/xml/XmlQEReader
org/jmol/adapter/readers/xml/XmlReader
org/jmol/adapter/readers/xml/XmlVaspReader
org/jmol/adapter/readers/xml/XmlXsdReader
org/jmol/adapter/readers/xtal/AimsReader
org/jmol/adapter/readers/xtal/CastepReader
org/jmol/adapter/readers/xtal/CrystalReader
org/jmol/adapter/readers/xtal/DmolReader
org/jmol/adapter/readers/xtal/EspressoReader
org/jmol/adapter/readers/xtal/GulpReader
org/jmol/adapter/readers/xtal/ShelxReader
org/jmol/adapter/readers/xtal/SiestaReader
org/jmol/adapter/readers/xtal/VaspOutcarReader
org/jmol/adapter/readers/xtal/Wien2kReader
org/jmol/adapter/smarter/Atom
org/jmol/adapter/smarter/AtomSetCollection
org/jmol/adapter/smarter/AtomSetCollectionReader
org/jmol/adapter/smarter/Bond
org/jmol/adapter/smarter/LimitedLineReader
org/jmol/adapter/smarter/Resolver
org/jmol/adapter/smarter/SmarterJmolAdapter
org/jmol/adapter/smarter/Structure
org/jmol/api/ApiPlatform
org/jmol/api/AtomIndexIterator
org/jmol/api/Event
org/jmol/api/Interface
org/jmol/api/JmolAdapter
org/jmol/api/JmolAppConsoleInterface
org/jmol/api/JmolBioResolver
org/jmol/api/JmolCallbackListener
org/jmol/api/JmolDialogInterface
org/jmol/api/JmolFilesReaderInterface
org/jmol/api/JmolGestureServerInterface
org/jmol/api/JmolImageCreatorInterface
org/jmol/api/JmolLineReader
org/jmol/api/JmolMeasurementClient
org/jmol/api/JmolModelKitInterface
org/jmol/api/JmolMovieCreatorInterface
org/jmol/api/JmolPdfCreatorInterface
org/jmol/api/JmolPopupInterface
org/jmol/api/JmolPromptInterface
org/jmol/api/JmolRendererInterface
org/jmol/api/JmolScriptEditorInterface
org/jmol/api/JmolSelectionListener
org/jmol/api/JmolSimpleViewer
org/jmol/api/JmolStatusListener
org/jmol/api/JmolTouchSimulatorInterface
org/jmol/api/JmolViewer
org/jmol/api/MepCalculationInterface
org/jmol/api/MinimizerInterface
org/jmol/api/QuantumCalculationInterface
org/jmol/api/QuantumPlaneCalculationInterface
org/jmol/api/SmilesMatcherInterface
org/jmol/api/SymmetryInterface
org/jmol/api/VolumeDataInterface
org/jmol/atomdata/AtomData
org/jmol/atomdata/AtomDataServer
org/jmol/atomdata/RadiusData
org/jmol/awt/Display
org/jmol/awt/Font
org/jmol/awt/Image
org/jmol/awt/Mouse
org/jmol/awt/Platform
org/jmol/bspt/Bspf
org/jmol/bspt/Bspt
org/jmol/bspt/CubeIterator
org/jmol/bspt/Element
org/jmol/bspt/Leaf
org/jmol/bspt/Node
org/jmol/console/AppletConsole
org/jmol/console/GetKey
org/jmol/console/JmolConsole
org/jmol/console/JmolFrame
org/jmol/console/JmolPrompt
org/jmol/console/KeyJCheckBox
org/jmol/console/KeyJCheckBoxMenuItem
org/jmol/console/KeyJMenu
org/jmol/console/KeyJMenuItem
org/jmol/console/KeyJRadioButtonMenuItem
org/jmol/console/ScriptEditor
org/jmol/constant/EnumAnimationMode
org/jmol/constant/EnumAxesMode
org/jmol/constant/EnumCallback
org/jmol/constant/EnumHBondType
org/jmol/constant/EnumPalette
org/jmol/constant/EnumQuantumShell
org/jmol/constant/EnumStereoMode
org/jmol/constant/EnumStructure
org/jmol/constant/EnumVdw
org/jmol/constant/StaticConstants
org/jmol/export/Export3D
org/jmol/export/JmolFileDropper
org/jmol/export/MeshData
org/jmol/export/UseTable
org/jmol/export/_IdtfExporter
org/jmol/export/_MayaExporter
org/jmol/export/_ObjExporter
org/jmol/export/_PovrayExporter
org/jmol/export/_TachyonExporter
org/jmol/export/_VrmlExporter
org/jmol/export/_X3dExporter
org/jmol/export/__CartesianExporter
org/jmol/export/__RayTracerExporter
org/jmol/export/___Exporter
org/jmol/export/dialog/Dialog
org/jmol/export/dialog/FileChooser
org/jmol/export/dialog/FilePreview
org/jmol/export/history/HistoryFile
org/jmol/export/image/AviCreator
org/jmol/export/image/GifEncoder
org/jmol/export/image/ImageCreator
org/jmol/export/image/ImageEncoder
org/jmol/export/image/ImageSelection
org/jmol/export/image/PngEncoder
org/jmol/export/image/PpmEncoder
org/jmol/g3d/Circle3D
org/jmol/g3d/Colix3D
org/jmol/g3d/Cylinder3D
org/jmol/g3d/Font3D
org/jmol/g3d/Graphics3D
org/jmol/g3d/Hermite3D
org/jmol/g3d/Line3D
org/jmol/g3d/Normix3D
org/jmol/g3d/Platform3D
org/jmol/g3d/Rgb16
org/jmol/g3d/Shade3D
org/jmol/g3d/Sphere3D
org/jmol/g3d/Text3D
org/jmol/g3d/Triangle3D
org/jmol/geodesic/EnvelopeCalculation
org/jmol/geodesic/Geodesic
org/jmol/i18n/GT
org/jmol/jvxl/api/MeshDataServer
org/jmol/jvxl/api/VertexDataServer
org/jmol/jvxl/calc/MarchingCubes
org/jmol/jvxl/calc/MarchingSquares
org/jmol/jvxl/data/JvxlCoder
org/jmol/jvxl/data/JvxlData
org/jmol/jvxl/data/MeshData
org/jmol/jvxl/data/VolumeData
org/jmol/jvxl/readers/ApbsReader
org/jmol/jvxl/readers/AtomDataReader
org/jmol/jvxl/readers/AtomPropertyMapper
org/jmol/jvxl/readers/CastepDensityReader
org/jmol/jvxl/readers/CubeReader
org/jmol/jvxl/readers/Dsn6BinaryReader
org/jmol/jvxl/readers/EfvetReader
org/jmol/jvxl/readers/IsoFxyReader
org/jmol/jvxl/readers/IsoFxyzReader
org/jmol/jvxl/readers/IsoIntersectReader
org/jmol/jvxl/readers/IsoMOReader
org/jmol/jvxl/readers/IsoMepReader
org/jmol/jvxl/readers/IsoMlpReader
org/jmol/jvxl/readers/IsoPlaneReader
org/jmol/jvxl/readers/IsoShapeReader
org/jmol/jvxl/readers/IsoSolventReader
org/jmol/jvxl/readers/JaguarReader
org/jmol/jvxl/readers/JvxlReader
org/jmol/jvxl/readers/JvxlXmlReader
org/jmol/jvxl/readers/KinemageReader
org/jmol/jvxl/readers/MapFileReader
org/jmol/jvxl/readers/MrcBinaryReader
org/jmol/jvxl/readers/MsmsReader
org/jmol/jvxl/readers/ObjReader
org/jmol/jvxl/readers/Parameters
org/jmol/jvxl/readers/PltFormattedReader
org/jmol/jvxl/readers/PmeshReader
org/jmol/jvxl/readers/PolygonFileReader
org/jmol/jvxl/readers/SurfaceFileReader
org/jmol/jvxl/readers/SurfaceGenerator
org/jmol/jvxl/readers/SurfaceReader
org/jmol/jvxl/readers/VolumeDataReader
org/jmol/jvxl/readers/VolumeFileReader
org/jmol/jvxl/readers/XplorReader
org/jmol/minimize/MinAtom
org/jmol/minimize/MinBond
org/jmol/minimize/Minimizer
org/jmol/minimize/Util
org/jmol/minimize/forcefield/Calculation
org/jmol/minimize/forcefield/Calculations
org/jmol/minimize/forcefield/CalculationsUFF
org/jmol/minimize/forcefield/FFParam
org/jmol/minimize/forcefield/ForceField
org/jmol/minimize/forcefield/ForceFieldUFF
org/jmol/modelkit/ModelKit
org/jmol/modelkit/ModelKitPopup
org/jmol/modelkit/ModelKitPopupResourceBundle
org/jmol/modelset/Atom
org/jmol/modelset/AtomCollection
org/jmol/modelset/AtomIteratorWithinModel
org/jmol/modelset/AtomIteratorWithinModelSet
org/jmol/modelset/Bond
org/jmol/modelset/BondCollection
org/jmol/modelset/BondIterator
org/jmol/modelset/BondIteratorSelected
org/jmol/modelset/Chain
org/jmol/modelset/Group
org/jmol/modelset/HBond
org/jmol/modelset/LabelToken
org/jmol/modelset/Measurement
org/jmol/modelset/MeasurementData
org/jmol/modelset/MeasurementPending
org/jmol/modelset/Model
org/jmol/modelset/ModelCollection
org/jmol/modelset/ModelLoader
org/jmol/modelset/ModelSet
org/jmol/modelset/Polymer
org/jmol/modelset/TickInfo
org/jmol/modelsetbio/AlphaMonomer
org/jmol/modelsetbio/AlphaPolymer
org/jmol/modelsetbio/AminoMonomer
org/jmol/modelsetbio/AminoPolymer
org/jmol/modelsetbio/BioPolymer
org/jmol/modelsetbio/CarbohydrateMonomer
org/jmol/modelsetbio/CarbohydratePolymer
org/jmol/modelsetbio/Helix
org/jmol/modelsetbio/Monomer
org/jmol/modelsetbio/NucleicMonomer
org/jmol/modelsetbio/NucleicPolymer
org/jmol/modelsetbio/PhosphorusMonomer
org/jmol/modelsetbio/PhosphorusPolymer
org/jmol/modelsetbio/ProteinStructure
org/jmol/modelsetbio/Resolver
org/jmol/modelsetbio/Sheet
org/jmol/modelsetbio/Turn
org/jmol/multitouch/ActionManagerMT
org/jmol/multitouch/JmolMultiTouchAdapter
org/jmol/multitouch/JmolMultiTouchClient
org/jmol/multitouch/JmolMultiTouchClientAdapter
org/jmol/multitouch/jni/JmolJniClientAdapter
org/jmol/multitouch/sparshui/JmolSparshClientAdapter
org/jmol/multitouch/sparshui/SinglePointGesture
org/jmol/multitouch/sparshui/TwoPointGesture
org/jmol/popup/JmolPopup
org/jmol/popup/MainPopupResourceBundle
org/jmol/popup/PopupResource
org/jmol/popup/SimplePopup
org/jmol/quantum/MOCalculation
org/jmol/quantum/MepCalculation
org/jmol/quantum/MlpCalculation
org/jmol/quantum/NciCalculation
org/jmol/quantum/QuantumCalculation
org/jmol/quantum/SlaterData
org/jmol/script/ContextToken
org/jmol/script/ParallelProcessor
org/jmol/script/ScriptCompilationTokenParser
org/jmol/script/ScriptCompiler
org/jmol/script/ScriptContext
org/jmol/script/ScriptEvaluator
org/jmol/script/ScriptFlowContext
org/jmol/script/ScriptFunction
org/jmol/script/ScriptMathProcessor
org/jmol/script/ScriptVariable
org/jmol/script/Token
org/jmol/shape/AtomShape
org/jmol/shape/Axes
org/jmol/shape/AxesRenderer
org/jmol/shape/Balls
org/jmol/shape/BallsRenderer
org/jmol/shape/Bbcage
org/jmol/shape/BbcageRenderer
org/jmol/shape/CageRenderer
org/jmol/shape/Echo
org/jmol/shape/EchoRenderer
org/jmol/shape/FontLineShape
org/jmol/shape/FontLineShapeRenderer
org/jmol/shape/FontShape
org/jmol/shape/Frank
org/jmol/shape/FrankRenderer
org/jmol/shape/Halos
org/jmol/shape/HalosRenderer
org/jmol/shape/Hover
org/jmol/shape/HoverRenderer
org/jmol/shape/Labels
org/jmol/shape/LabelsRenderer
org/jmol/shape/Measures
org/jmol/shape/MeasuresRenderer
org/jmol/shape/Mesh
org/jmol/shape/MeshCollection
org/jmol/shape/MeshRenderer
org/jmol/shape/Object2d
org/jmol/shape/Object2dShape
org/jmol/shape/Shape
org/jmol/shape/ShapeRenderer
org/jmol/shape/Stars
org/jmol/shape/StarsRenderer
org/jmol/shape/Sticks
org/jmol/shape/SticksRenderer
org/jmol/shape/Text
org/jmol/shape/TextShape
org/jmol/shape/Uccage
org/jmol/shape/UccageRenderer
org/jmol/shapebio/Backbone
org/jmol/shapebio/BackboneRenderer
org/jmol/shapebio/BioShape
org/jmol/shapebio/BioShapeCollection
org/jmol/shapebio/BioShapeRenderer
org/jmol/shapebio/Cartoon
org/jmol/shapebio/CartoonRenderer
org/jmol/shapebio/MeshRibbon
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