Jmol is an open-source Java viewer for chemical structures in 3D Jmol icon with features for chemicals, crystals, materials and biomolecules

JAR File Size and Download Location:

File name: JmolApplet.jar, JmolApplet-12.2.7.jar
File size: 2326475 bytes
Date modified: 26-Nov-2011
Download: Jmol Applet

List of Classes in the JAR:

JmolApplet
org/jmol/adapter/readers/cifpdb/CifReader
org/jmol/adapter/readers/cifpdb/PdbReader
org/jmol/adapter/readers/molxyz/Mol3DReader
org/jmol/adapter/readers/molxyz/MolReader
org/jmol/adapter/readers/molxyz/XyzReader
org/jmol/adapter/readers/more/BinaryDcdReader
org/jmol/adapter/readers/more/BinaryReader
org/jmol/adapter/readers/more/ForceFieldReader
org/jmol/adapter/readers/more/GromacsReader
org/jmol/adapter/readers/more/MdCrdReader
org/jmol/adapter/readers/more/MdTopReader
org/jmol/adapter/readers/more/Mol2Reader
org/jmol/adapter/readers/more/P2nReader
org/jmol/adapter/readers/more/PqrReader
org/jmol/adapter/readers/quantum/AdfReader
org/jmol/adapter/readers/quantum/BasisFunctionReader
org/jmol/adapter/readers/quantum/CsfReader
org/jmol/adapter/readers/quantum/DgridReader
org/jmol/adapter/readers/quantum/GamessReader
org/jmol/adapter/readers/quantum/Ga messUKReader
org/jmol/adapter/readers/quantum/GamessUSReader
org/jmol/adapter/readers/quantum/GaussianReader
org/jmol/adapter/readers/quantum/GaussianWfnReader
org/jmol/adapter/readers/quantum/GenNBOReader
org/jmol/adapter/readers/quantum/JaguarReader
org/jmol/adapter/readers/quantum/MOReader
org/jmol/adapter/readers/quantum/MoldenReader
org/jmol/adapter/readers/quantum/MopacGraphfReader
org/jmol/adapter/readers/quantum/MopacSlaterReader
org/jmol/adapter/readers/quantum/NWChemReader
org/jmol/adapter/readers/quantum/OdysseyReader
org/jmol/adapter/readers/quantum/PsiReader
org/jmol/adapter/readers/quantum/QchemReader
org/jmol/adapter/readers/quantum/SlaterReader
org/jmol/adapter/readers/quantum/SpartanArchive
org/jmol/adapter/readers/quantum/SpartanInputReader
org/jmol/adapter/readers/quantum/SpartanReader
org/jmol/adapter/readers/quantum/SpartanSmolReader
org/jmol/adapter/readers/quantum/WebMOReade r
org/jmol/adapter/readers/simple/AlchemyReader
org/jmol/adapter/readers/simple/AmpacReader
org/jmol/adapter/readers/simple/CubeReader
org/jmol/adapter/readers/simple/FoldingXyzReader
org/jmol/adapter/readers/simple/GhemicalMMReader
org/jmol/adapter/readers/simple/HyperChemReader
org/jmol/adapter/readers/simple/JmeReader
org/jmol/adapter/readers/simple/MopacReader
org/jmol/adapter/readers/xml/XmlArgusReader
org/jmol/adapter/readers/xml/XmlChem3dReader
org/jmol/adapter/readers/xml/XmlCmlReader
org/jmol/adapter/readers/xml/XmlMolproReader
org/jmol/adapter/readers/xml/XmlOdysseyReader
org/jmol/adapter/readers/xml/XmlQEReader
org/jmol/adapter/readers/xml/XmlReader
org/jmol/adapter/readers/xml/XmlVaspReader
org/jmol/adapter/readers/xml/XmlXsdReader
org/jmol/adapter/readers/xtal/AimsReader
org/jmol/adapter/readers/xtal/CastepReader
org/jmol/adapter/readers/xtal/CrystalReader
org/jmol/adapter/reade rs/xtal/DmolReader
org/jmol/adapter/readers/xtal/EspressoReader
org/jmol/adapter/readers/xtal/GulpReader
org/jmol/adapter/readers/xtal/ShelxReader
org/jmol/adapter/readers/xtal/SiestaReader
org/jmol/adapter/readers/xtal/VaspOutcarReader
org/jmol/adapter/readers/xtal/Wien2kReader
org/jmol/adapter/smarter/Atom
org/jmol/adapter/smarter/AtomSetCollection
org/jmol/adapter/smarter/AtomSetCollectionReader
org/jmol/adapter/smarter/Bond
org/jmol/adapter/smarter/LimitedLineReader
org/jmol/adapter/smarter/Resolver
org/jmol/adapter/smarter/SmarterJmolAdapter
org/jmol/adapter/smarter/Structure
org/jmol/api/ApiPlatform
org/jmol/api/AtomIndexIterator
org/jmol/api/Event
org/jmol/api/Interface
org/jmol/api/JmolAdapter
org/jmol/api/JmolAppConsoleInterface
org/jmol/api/JmolBioResolver
org/jmol/api/JmolCallbackListener
org/jmol/api/JmolDialogInterface
org/jmol/api/JmolFilesReaderInterface
org/jmol/a pi/JmolGestureServerInterface
org/jmol/api/JmolImageCreatorInterface
org/jmol/api/JmolLineReader
org/jmol/api/JmolMeasurementClient
org/jmol/api/JmolModelKitInterface
org/jmol/api/JmolMovieCreatorInterface
org/jmol/api/JmolPdfCreatorInterface
org/jmol/api/JmolPopupInterface
org/jmol/api/JmolPromptInterface
org/jmol/api/JmolRendererInterface
org/jmol/api/JmolScriptEditorInterface
org/jmol/api/JmolSelectionListener
org/jmol/api/JmolSimpleViewer
org/jmol/api/JmolStatusListener
org/jmol/api/JmolTouchSimulatorInterface
org/jmol/api/JmolViewer
org/jmol/api/MepCalculationInterface
org/jmol/api/MinimizerInterface
org/jmol/api/QuantumCalculationInterface
org/jmol/api/QuantumPlaneCalculationInterface
org/jmol/api/SmilesMatcherInterface
org/jmol/api/SymmetryInterface
org/jmol/api/VolumeDataInterface
org/jmol/applet/AppletWrapper
org/jmol/applet/ClassPreloader
org/jmol/applet/Jmol
org/jmo l/applet/JmolAppletInterface
org/jmol/applet/JmolAppletRegistry
org/jmol/applet/TickerThread
org/jmol/applet/WrappedApplet
org/jmol/applet/WrappedAppletLoader
org/jmol/atomdata/AtomData
org/jmol/atomdata/AtomDataServer
org/jmol/atomdata/RadiusData
org/jmol/awt/Display
org/jmol/awt/Font
org/jmol/awt/Image
org/jmol/awt/Mouse
org/jmol/awt/Platform
org/jmol/bspt/Bspf
org/jmol/bspt/Bspt
org/jmol/bspt/CubeIterator
org/jmol/bspt/Element
org/jmol/bspt/Leaf
org/jmol/bspt/Node
org/jmol/console/AppletConsole
org/jmol/console/GetKey
org/jmol/console/JmolConsole
org/jmol/console/JmolFrame
org/jmol/console/JmolPrompt
org/jmol/console/KeyJCheckBox
org/jmol/console/KeyJCheckBoxMenuItem
org/jmol/console/KeyJMenu
org/jmol/console/KeyJMenuItem
org/jmol/console/KeyJRadioButtonMenuItem
org/jmol/console/ScriptEditor
org/jmol/constant/EnumAnimationMode
org/jmol/constant/EnumAxesModeorg/jmol/constant/EnumCallback
org/jmol/constant/EnumHBondType
org/jmol/constant/EnumPalette
org/jmol/constant/EnumQuantumShell
org/jmol/constant/EnumStereoMode
org/jmol/constant/EnumStructure
org/jmol/constant/EnumVdw
org/jmol/constant/StaticConstants
org/jmol/g3d/Circle3D
org/jmol/g3d/Colix3D
org/jmol/g3d/Cylinder3D
org/jmol/g3d/Font3D
org/jmol/g3d/Graphics3D
org/jmol/g3d/Hermite3D
org/jmol/g3d/Line3D
org/jmol/g3d/Normix3D
org/jmol/g3d/Platform3D
org/jmol/g3d/Rgb16
org/jmol/g3d/Shade3D
org/jmol/g3d/Sphere3D
org/jmol/g3d/Text3D
org/jmol/g3d/Triangle3D
org/jmol/geodesic/EnvelopeCalculation
org/jmol/geodesic/Geodesic
org/jmol/i18n/GT
org/jmol/jvxl/api/MeshDataServer
org/jmol/jvxl/api/VertexDataServer
org/jmol/jvxl/calc/MarchingCubes
org/jmol/jvxl/calc/MarchingSquares
org/jmol/jvxl/data/JvxlCoder
org/jmol/jvxl/data/JvxlData
org/jmol/jvxl/data/MeshData
org/jmo l/jvxl/data/VolumeData
org/jmol/jvxl/readers/ApbsReader
org/jmol/jvxl/readers/AtomDataReader
org/jmol/jvxl/readers/AtomPropertyMapper
org/jmol/jvxl/readers/CastepDensityReader
org/jmol/jvxl/readers/CubeReader
org/jmol/jvxl/readers/Dsn6BinaryReader
org/jmol/jvxl/readers/EfvetReader
org/jmol/jvxl/readers/IsoFxyReader
org/jmol/jvxl/readers/IsoFxyzReader
org/jmol/jvxl/readers/IsoIntersectReader
org/jmol/jvxl/readers/IsoMOReader
org/jmol/jvxl/readers/IsoMepReader
org/jmol/jvxl/readers/IsoMlpReader
org/jmol/jvxl/readers/IsoPlaneReader
org/jmol/jvxl/readers/IsoShapeReader
org/jmol/jvxl/readers/IsoSolventReader
org/jmol/jvxl/readers/JaguarReader
org/jmol/jvxl/readers/JvxlReader
org/jmol/jvxl/readers/JvxlXmlReader
org/jmol/jvxl/readers/KinemageReader
org/jmol/jvxl/readers/MapFileReader
org/jmol/jvxl/readers/MrcBinaryReader
org/jmol/jvxl/readers/MsmsReader
org/jmol/jvxl/readers/ObjReader
o rg/jmol/jvxl/readers/Parameters
org/jmol/jvxl/readers/PltFormattedReader
org/jmol/jvxl/readers/PmeshReader
org/jmol/jvxl/readers/PolygonFileReader
org/jmol/jvxl/readers/SurfaceFileReader
org/jmol/jvxl/readers/SurfaceGenerator
org/jmol/jvxl/readers/SurfaceReader
org/jmol/jvxl/readers/VolumeDataReader
org/jmol/jvxl/readers/VolumeFileReader
org/jmol/jvxl/readers/XplorReader
org/jmol/minimize/MinAtom
org/jmol/minimize/MinBond
org/jmol/minimize/Minimizer
org/jmol/minimize/Util
org/jmol/minimize/forcefield/Calculation
org/jmol/minimize/forcefield/Calculations
org/jmol/minimize/forcefield/CalculationsUFF
org/jmol/minimize/forcefield/FFParam
org/jmol/minimize/forcefield/ForceField
org/jmol/minimize/forcefield/ForceFieldUFF
org/jmol/modelkit/ModelKit
org/jmol/modelkit/ModelKitPopup
org/jmol/modelkit/ModelKitPopupResourceBundle
org/jmol/modelset/Atom
org/jmol/modelset/AtomCollection
org/jm ol/modelset/AtomIteratorWithinModel
org/jmol/modelset/AtomIteratorWithinModelSet
org/jmol/modelset/Bond
org/jmol/modelset/BondCollection
org/jmol/modelset/BondIterator
org/jmol/modelset/BondIteratorSelected
org/jmol/modelset/Chain
org/jmol/modelset/Group
org/jmol/modelset/HBond
org/jmol/modelset/LabelToken
org/jmol/modelset/Measurement
org/jmol/modelset/MeasurementData
org/jmol/modelset/MeasurementPending
org/jmol/modelset/Model
org/jmol/modelset/ModelCollection
org/jmol/modelset/ModelLoader
org/jmol/modelset/ModelSet
org/jmol/modelset/Polymer
org/jmol/modelset/TickInfo
org/jmol/modelsetbio/AlphaMonomer
org/jmol/modelsetbio/AlphaPolymer
org/jmol/modelsetbio/AminoMonomer
org/jmol/modelsetbio/AminoPolymer
org/jmol/modelsetbio/BioPolymer
org/jmol/modelsetbio/CarbohydrateMonomer
org/jmol/modelsetbio/CarbohydratePolymer
org/jmol/modelsetbio/Helix
org/jmol/modelsetbio/Monomer
org/jmol/modelsetbio/NucleicMonomer
org/jmol/modelsetbio/NucleicPolymer
org/jmol/modelsetbio/PhosphorusMonomer
org/jmol/modelsetbio/PhosphorusPolymer
org/jmol/modelsetbio/ProteinStructure
org/jmol/modelsetbio/Resolver
org/jmol/modelsetbio/Sheet
org/jmol/modelsetbio/Turn
org/jmol/popup/JmolPopup
org/jmol/popup/MainPopupResourceBundle
org/jmol/popup/PopupResource
org/jmol/popup/SimplePopup
org/jmol/quantum/MOCalculation
org/jmol/quantum/MepCalculation
org/jmol/quantum/MlpCalculation
org/jmol/quantum/NciCalculation
org/jmol/quantum/QuantumCalculation
org/jmol/quantum/SlaterData
org/jmol/script/ContextToken
org/jmol/script/ParallelProcessor
org/jmol/script/ScriptCompilationTokenParser
org/jmol/script/ScriptCompiler
org/jmol/script/ScriptContext
org/jmol/script/ScriptEvaluator
org/jmol/script/ScriptFlowContext
org/jmol/script/ScriptFunction
org/jmol/script/ScriptMathProcessor
or g/jmol/script/ScriptVariable
org/jmol/script/Token
org/jmol/shape/AtomShape
org/jmol/shape/Axes
org/jmol/shape/AxesRenderer
org/jmol/shape/Balls
org/jmol/shape/BallsRenderer
org/jmol/shape/Bbcage
org/jmol/shape/BbcageRenderer
org/jmol/shape/CageRenderer
org/jmol/shape/Echo
org/jmol/shape/EchoRenderer
org/jmol/shape/FontLineShape
org/jmol/shape/FontLineShapeRenderer
org/jmol/shape/FontShape
org/jmol/shape/Frank
org/jmol/shape/FrankRenderer
org/jmol/shape/Halos
org/jmol/shape/HalosRenderer
org/jmol/shape/Hover
org/jmol/shape/HoverRenderer
org/jmol/shape/Labels
org/jmol/shape/LabelsRenderer
org/jmol/shape/Measures
org/jmol/shape/MeasuresRenderer
org/jmol/shape/Mesh
org/jmol/shape/MeshCollection
org/jmol/shape/MeshRenderer
org/jmol/shape/Object2d
org/jmol/shape/Object2dShape
org/jmol/shape/Shape
org/jmol/shape/ShapeRenderer
org/jmol/shape/Stars
org/jmol/shape/ StarsRenderer
org/jmol/shape/Sticks
org/jmol/shape/SticksRenderer
org/jmol/shape/Text
org/jmol/shape/TextShape
org/jmol/shape/Uccage
org/jmol/shape/UccageRenderer
org/jmol/shapebio/Backbone
org/jmol/shapebio/BackboneRenderer
org/jmol/shapebio/BioShape
org/jmol/shapebio/BioShapeCollection
org/jmol/shapebio/BioShapeRenderer
org/jmol/shapebio/Cartoon
org/jmol/shapebio/CartoonRenderer
org/jmol/shapebio/MeshRibbon
org/jmol/shapebio/MeshRibbonRenderer
org/jmol/shapebio/Ribbons
org/jmol/shapebio/RibbonsRenderer
org/jmol/shapebio/Rockets
org/jmol/shapebio/RocketsRenderer
org/jmol/shapebio/Strands
org/jmol/shapebio/StrandsRenderer
org/jmol/shapebio/Trace
org/jmol/shapebio/TraceRenderer
org/jmol/shapespecial/Dipole
org/jmol/shapespecial/Dipoles
org/jmol/shapespecial/DipolesRenderer
org/jmol/shapespecial/Dots
org/jmol/shapespecial/DotsRenderer
org/jmol/shapespecial/Draw
org/j mol/shapespecial/DrawMesh
org/jmol/shapespecial/DrawRenderer
org/jmol/shapespecial/Ellipsoids
org/jmol/shapespecial/EllipsoidsRenderer
org/jmol/shapespecial/GeoSurface
org/jmol/shapespecial/GeoSurfaceRenderer
org/jmol/shapespecial/Polyhedra
org/jmol/shapespecial/PolyhedraRenderer
org/jmol/shapespecial/Vectors
org/jmol/shapespecial/VectorsRenderer
org/jmol/shapesurface/Contact
org/jmol/shapesurface/ContactRenderer
org/jmol/shapesurface/Isosurface
org/jmol/shapesurface/IsosurfaceMesh
org/jmol/shapesurface/IsosurfaceRenderer
org/jmol/shapesurface/LcaoCartoon
org/jmol/shapesurface/LcaoCartoonRenderer
org/jmol/shapesurface/MolecularOrbital
org/jmol/shapesurface/MolecularOrbitalRenderer
org/jmol/shapesurface/Plot3D
org/jmol/shapesurface/Plot3DRenderer
org/jmol/shapesurface/Pmesh
org/jmol/shapesurface/PmeshRenderer
org/jmol/smiles/InvalidSmilesException
org/jmol/smiles/SmilesAromatic
or g/jmol/smiles/SmilesAtom
org/jmol/smiles/SmilesBond
org/jmol/smiles/SmilesGenerator
org/jmol/smiles/SmilesMatcher
org/jmol/smiles/SmilesMeasure
org/jmol/smiles/SmilesParser
org/jmol/smiles/SmilesSearch
org/jmol/symmetry/HallInfo
org/jmol/symmetry/PointGroup
org/jmol/symmetry/Rotation
org/jmol/symmetry/SpaceGroup
org/jmol/symmetry/Symmetry
org/jmol/symmetry/SymmetryInfo
org/jmol/symmetry/SymmetryOperation
org/jmol/symmetry/Translation
org/jmol/symmetry/UnitCell
org/jmol/translation/JmolApplet/ar/Messages_ar
org/jmol/translation/JmolApplet/bs/Messages_bs
org/jmol/translation/JmolApplet/ca/Messages_ca
org/jmol/translation/JmolApplet/cs/Messages_cs
org/jmol/translation/JmolApplet/da/Messages_da
org/jmol/translation/JmolApplet/de/Messages_de
org/jmol/translation/JmolApplet/el/Messages_el
org/jmol/translation/JmolApplet/en_GB/Messages_en_GB
org/jmol/translation/JmolApplet/es/Messages_esorg/jmol/translation/JmolApplet/et/Messages_et
org/jmol/translation/JmolApplet/fi/Messages_fi
org/jmol/translation/JmolApplet/fr/Messages_fr
org/jmol/translation/JmolApplet/fy/Messages_fy
org/jmol/translation/JmolApplet/hu/Messages_hu
org/jmol/translation/JmolApplet/hy/Messages_hy
org/jmol/translation/JmolApplet/id/Messages_id
org/jmol/translation/JmolApplet/it/Messages_it
org/jmol/translation/JmolApplet/jv/Messages_jv
org/jmol/translation/JmolApplet/ko/Messages_ko
org/jmol/translation/JmolApplet/ms/Messages_ms
org/jmol/translation/JmolApplet/nb/Messages_nb
org/jmol/translation/JmolApplet/nl/Messages_nl
org/jmol/translation/JmolApplet/oc/Messages_oc
org/jmol/translation/JmolApplet/pl/Messages_pl
org/jmol/translation/JmolApplet/pt/Messages_pt
org/jmol/translation/JmolApplet/pt_BR/Messages_pt_BR
org/jmol/translation/JmolApplet/ru/Messages_ru
org/jmol/translation/JmolApplet/sl/Messages_sl
org/jmol/ translation/JmolApplet/sv/Messages_sv
org/jmol/translation/JmolApplet/ta/Messages_ta
org/jmol/translation/JmolApplet/te/Messages_te
org/jmol/translation/JmolApplet/tr/Messages_tr
org/jmol/translation/JmolApplet/uk/Messages_uk
org/jmol/translation/JmolApplet/zh_CN/Messages_zh_CN
org/jmol/translation/JmolApplet/zh_TW/Messages_zh_TW
org/jmol/util/ArrayUtil
org/jmol/util/Base64
org/jmol/util/BinaryDocument
org/jmol/util/BitSetUtil
org/jmol/util/BoxInfo
org/jmol/util/CifDataReader
org/jmol/util/ColorEncoder
org/jmol/util/CommandHistory
org/jmol/util/CompoundDocument
org/jmol/util/ContactPair
org/jmol/util/DCT
org/jmol/util/DefaultLogger
org/jmol/util/Dimension
org/jmol/util/Eigen
org/jmol/util/Elements
org/jmol/util/Escape
org/jmol/util/FastBitSet
org/jmol/util/Huffman
org/jmol/util/Int2IntHash
org/jmol/util/JmolEdge
org/jmol/util/JmolMolecule
org/jmol/util/JmolNode
org/jm ol/util/JpegEncoder
org/jmol/util/JpegInfo
org/jmol/util/KfDocument
org/jmol/util/LimitedLineReader
org/jmol/util/Logger
org/jmol/util/LoggerInterface
org/jmol/util/Measure
org/jmol/util/MeshSurface
org/jmol/util/OutputStringBuffer
org/jmol/util/Parser
org/jmol/util/Point3fi
org/jmol/util/Quadric
org/jmol/util/Quaternion
org/jmol/util/Rectangle
org/jmol/util/SimpleUnitCell
org/jmol/util/SlowBitSet
org/jmol/util/SurfaceFileTyper
org/jmol/util/TempArray
org/jmol/util/TextFormat
org/jmol/util/TriangleData
org/jmol/util/XmlReader
org/jmol/util/XmlUtil
org/jmol/util/ZipUtil
org/jmol/viewer/ActionManager
org/jmol/viewer/AnimationManager
org/jmol/viewer/ColorManager
org/jmol/viewer/DataManager
org/jmol/viewer/FileManager
org/jmol/viewer/JmolConstants
org/jmol/viewer/ModelManager
org/jmol/viewer/PropertyManager
org/jmol/viewer/RepaintManager
org/jmol/viewer/ScriptMan ager
org/jmol/viewer/SelectionManager
org/jmol/viewer/ShapeManager
org/jmol/viewer/StateManager
org/jmol/viewer/StatusManager
org/jmol/viewer/TransformManager
org/jmol/viewer/TransformManager10
org/jmol/viewer/TransformManager11
org/jmol/viewer/Viewer
org/jmol/viewer/binding/Binding
org/jmol/viewer/binding/DragBinding
org/jmol/viewer/binding/JmolBinding
org/jmol/viewer/binding/PfaatBinding
org/jmol/viewer/binding/RasmolBinding
javax/vecmath/AxisAngle4d
javax/vecmath/AxisAngle4f
javax/vecmath/Matrix3d
javax/vecmath/Matrix3f
javax/vecmath/Matrix4d
javax/vecmath/Matrix4f
javax/vecmath/Point2d
javax/vecmath/Point3d
javax/vecmath/Point3f
javax/vecmath/Point3i
javax/vecmath/Point4d
javax/vecmath/Point4f
javax/vecmath/Quat4d
javax/vecmath/Quat4f
javax/vecmath/SingularMatrixException
javax/vecmath/Tuple2d
javax/vecmath/Tuple3d
javax/vecmath/Tuple3f
javax/vecmath/Tupl e3i
javax/vecmath/Tuple4d
javax/vecmath/Tuple4f
javax/vecmath/Vector3d
javax/vecmath/Vector3f
javax/vecmath/Vector4f