BioJava is an open-source project dedicated to providing a Java framework for processing biological data. It provides analytical and statistical routines, parsers for common file formats and allows the manipulation of sequences and 3D structures. The goal of the biojava project is to facilitate rapid application development for bioinformatics.

sequencing-1.8.1.jar is the Sequencing module of BioJava 1.8.

JAR File Size and Download Location:

File name: sequencing.jar, sequencing-1.8.1.jar
File size: 75859 bytes
Date modified: 14-Feb-2011
Download: BioJava - Sequencing

Manifest of the JAR:

Archiver-Version: Plexus Archiver
Built-By: andreas
Build-Jdk: 1.6.0_0

List of Classes in the JAR:

org/biojava/bio/chromatogram/ChromatogramTools
org/biojava/bio/chromatogram/ChromatogramFactory
org/biojava/bio/chromatogram/graphic/ChromatogramNonlinearScaler
org/biojava/bio/chromatogram/graphic/FixedBaseWidthScaler
org/biojava/bio/chromatogram/graphic/ChromatogramGraphic
org/biojava/bio/chromatogram/UnsupportedChromatogramFormatException
org/biojava/bio/chromatogram/AbstractChromatogram
org/biojava/bio/chromatogram/Chromatogram
org/biojava/bio/chromatogram/SimpleChromatogram
org/biojava/bio/program/scf/SCF
org/biojava/bio/program/fastq/IlluminaFastqReader
org/biojava/bio/program/fastq/AbstractFastqReader
org/biojava/bio/program/fastq/FastqWriter
org/biojava/bio/program/fastq/FastqBuilder
org/biojava/bio/program/fastq/Fastq
org/biojava/bio/program/fastq/SangerFastqWriter
org/biojava/bio/program/fastq/AbstractFastqWriter
org/biojava/bio/program/fastq/SangerFastqReader
org/biojava/bio/program/fastq/SolexaFastqReader
org/biojava/bio/program/fastq/FastqVariant
org/biojava/bio/program/fastq/FastqReader
org/biojava/bio/program/fastq/IlluminaFastqWriter
org/biojava/bio/program/fastq/SolexaFastqWriter
org/biojava/bio/program/abi/ABIFChromatogram
org/biojava/bio/program/abi/ABIFParser
org/biojava/bio/program/abi/ABITrace
org/biojava/bio/program/abi/ABITools